Trabaja en bioinformática con eDNA en Hawaii ($5,600 – $6,300/mes)

 Job Summary

CLOSING DATE:  March 29, 2024, or until filled. Applications received after this deadline may be considered only if the position is not filled or up to the date a selection has been approved by the RCUH (whichever comes first).

Regular, Full-Time, RCUH Non-Civil Service position with the School of Ocean and Earth Science and Technology (SOEST), Cooperative Institute for Marine and Atmospheric Research (CIMAR) located at the National Marine Fisheries Service (NMFS), Pacific Islands Fisheries Science Center (PIFSC) in Honolulu, Hawai‘i.  Continuation of employment is dependent upon program/operational needs, satisfactory work performance, availability of funds, and compliance with applicable Federal/State laws.

MONTHLY SALARY RANGE:  $5,600 – $6,300/Mon.

DUTIES:  In collaboration with PIFSC scientists, leads bioinformatic research to support environmental DNA (eDNA) analysis. Operationalizes workflows to advance and apply eDNA techniques for characterizing communities. Improves accessibility of existing metabarcoding pipelines and tools on centralized computing resources. Participates in data analysis, synthesis of eDNA and diet metabarcoding data products to evaluate community diversity, species abundance, and ecosystem structure in nearshore and pelagic marine environments. Co-authors manuscripts describing the research for publication in peer-reviewed scientific journals. Presents findings at scientific meetings and workshops.  May participate in research cruises as needed as well as biological sample collection.

PRIMARY QUALIFICATIONS: 
EDUCATION: PhD from an accredited college or university in Computational Biology, Statistics, Genomics, Marine Science or a related field of study.
EXPERIENCE: Up to one (0-1) year of experience developing and applying methods to quantitatively assess marine life using genetics/genomics techniques.
KNOWLEDGE: Extensive programming knowledge of, R Python, or SQL for algorithm development and eDNA data analysis.

ABILITIES & SKILLS: Must be able to meet and maintain the United States Department of Commerce (USDOC) and National Oceanic and Atmospheric Administration (NOAA) security requirements to access work location.  Must be a US Citizen or Permanent Resident Alien.  Previous authorship or co-authorship of publications in a related field of study. Good communication skills, both orally and in writing. Post Offer/Employment Condition: Must be able to meet and maintain U.S. Department of Commerce (USDOC), National Oceanic and Atmospheric Administration (NOAA) security requirements for working in a federal facility, which includes being fingerprinted and having a federal background check performed prior to date of hire and maintained throughout duration of employment.  Must be able to complete the UH Information Security Awareness Training (ISAT) within two (2) weeks from date of hire, and re-certify every twelve (12) months.

PHYSICAL/MEDICAL DEMANDS: Ability to work long hours behind the desktop and in the laboratory and aboard research vessels and aboard small boats (fifteen to twenty (15’-20’) feet) in coastal and oceanic waters.  Post Offer/Employment Condition: Must be able to obtain NOAA Medical Clearance for embarking/working on NOAA research vessels or other appropriate vessels which includes providing proof of required immunizations and/or obtaining the necessary immunizations as required by NOAA Marine and Aviation Operations.

POLICY/REGULATORY REQUIREMENT: As a condition of employment, employee will be subject to all applicable RCUH policies, procedures, and trainings and, as applicable, subject to University of Hawai‘i’s and/or business entity’s policies, procedures, and trainings.  Violation of RCUH’s, UH’s, or business entity’s policies and/or procedures or applicable State or Federal laws and/or regulations may lead to disciplinary action (including, but not limited to possible termination of employment, personal fines, civil and/or criminal penalties, etc.).

SECONDARY QUALIFICATIONS:   

Experience developing and using databases and using metadata stored in SQL binaries. Knowledge of fish ecology or fisheries science in Hawai‘i and the Pacific Island Region. Familiarity with genetic/genomic lab work (from DNA extraction to using real-time quantitative PCRs to sequencing on NGS platforms).

INQUIRIES:  Nicole Wakazuru-Yoza 808-956-5018 (Oahu).

APPLICATION REQUIREMENTS: Please go to www.rcuh.com and click on “Job Postings.” You must submit the following documents online to be considered for the position: 1) Cover Letter, 2) Resume, 3) Supervisory References, 4) Copy of Degree(s)/Transcript(s)/Certificate(s). All online applications must be submitted/received by the closing date (11:59 P.M. Hawai‘i Standard Time/RCUH receipt time) as stated on the job posting. If you do not have access to our system and the closing date is imminent, you may send additional documents to rcuh_recruitment@rcuh.com. If you have questions on the application process and/or need assistance, please call (808)956-7262. Please visit https://www.rcuh.com/document-library/3-000/benefits/rcuh-benefits-at-a-glance/ for more information on RCUH’s Benefits for eligible employees.

RCUH’s mission is to support and enhance research, development and training in Hawai‘i, with a focus on the University of Hawai‘i. 

We are an equal opportunity employer and all qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity or expression, pregnancy, age, national origin, disability status, genetic information, protected veteran status, or any other characteristic protected by law.

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Oferta assistente de investigacion (Chironomidae y eDNA) en la universidad de Hong Kong

The eDNA and eEcology Laboratory (www.seymourlab.net) at The University of Hong Kong is looking for a full-time Research Assistant II. The position is to commence as soon as possible for 6 months, with the possibility of renewal subject to satisfactory performance.

The project aims to assess the biodiversity of the largest freshwater insect family (Diptera: Chironomidae) and their link with stream conservation in Hong Kong. The RA will assist in the field surveying of Chironomidae, using both traditional insect sampling methods and novel eDNA sampling methods across stream sampling sites in Hong Kong. The RA will also be responsible for the sorting of the collected field samples, assisting in the identification and barcoding of novel species.

Chironomidae are commonly referred to as the non-biting midges. It is a highly dispersive group in combination with its high species diversity. Chironomids are ecologically critical as they play the role of prey in many food chains. During the larval stage, aquatic habitats such as rivers are strongly preferred. Due to their great abundance and water-related life history, Chironomidae has been an ideal taxon for biomonitoring.

The applicant should possess a bachelor’s degree in ecology, evolutionary biology or another relevant field. Desirable skills include experience in identifying/sorting insects, outdoor field sampling experience. Proficiency in written and spoken English is mandatory. Candidates with a strong sense of responsibility, good organizational skills, a collaborative nature, and those having a valid Hong Kong driving license will be preferred.

A highly competitive salary commensurate with qualifications and experience will be offered, in addition to annual leave and medical benefits. The University only accepts online application for the above posts.  Applicants should apply online and upload an up-to-date CV (max 2 pages), letter of intent and contact details for 3 references to Dr. Mathew Seymour (matsey@hku.hk) before 15 October 2023. Assessment of applications will begin as soon as possible.

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Postdoc con tiburones y ADN ambiental en la costa francesa dentro de un proyecto colaborativo e internacional

Oferta compartida por Nuria


As part of the Biodiversa+ eWHALE project (https://ewhale.eu/), we are currently seeking a 24-month postdoctoral researcher to study porbeagle sharks' population ecology and genetics in Brittany (France), using eDNA methods. The position will be based at UMR DECOD in Rennes/France (https://www.umr-decod.fr/en) and is available from 1st October 2023. 

Porbeagle sharks (Lamna nasus) aggregate in unusually high numbers in shallow water off Brittany, northwest France. The hired post-doc will develop and implement eDNA methods to :

• Clarify its spatio-temporal patterns in distribution and habitat-use by analysing water eDNA samples collected from different locations in shallow water off the Tregor/Goelo coast and at various time points.
• Perform individual-level haplotyping from water eDNA and estimate intraspecific genetic diversity and structure. We aim to better understand their genetic variatibility, relatedness and potential subgroups (comparison with existing genetic data from the Bay of Biscay). In addition, we will also attempt to develop a novel method for genotyping a panel of SNPs to fingerpinting individual from seawater eDNA (comparison with visual observations and genotypes obtained from biopsies).
• Identify associated marine megafauna (marine mammals, Atlantic bluefin tuna, other sharks) and potential preys (fish, cephalopods, crustaceans) using water eDNA metabarcoding. This will help us gain insights into the ecological interactions between porbeagles and their prey, shedding light on their trophic relationships and feeding behavior.

Candidate profile
We are seeking for a highly motivated and enthusiastic postdoctoral researcher with a burning interest for contributing to marine conservation and the development of molecular tools. She/He will play a key role for comparing the success of different eDNA sampling approaches and optimizing the laboratory and bioinformatic processing of samples collected during the pilot study (Water eDNA vs biopsies) in 2023 (pilot study) and the main sampling phase in 2024.
All interested candidates irrespective of age, gender, race, disability, religion or ethnic background are encouraged to apply. 

Qualifications and Skills

• A Ph.D. in a relevant field, such as marine biology, conservation genetics, or environmental science, with a focus on molecular techniques and eDNA studies.
• Strong expertise in molecular biology, DNA extraction, PCR amplification, and sequencing methodologies.
• Proficiency in bioinformatic pipelines for processing high-throughput sequencing data.
• Ability to work independently, efficiently manage research tasks, and meet project deadlines.
• Excellent communication skills and a collaborative mindset to foster effective interactions within the research team and with project partners.
• Fluency in English (both written and spoken) is required.

The candidate will be selected based on previous scientific track record and qualifications of relevance to the described projects. French speaking skills not mandatory, however, excellent written and spoken English is a requirement.

Working place and collaborations.
The successful applicant will work directly with Erwan Quéméré in a stimulating research group (http://www.quemere.fr/) based at the Research unit DECOD « Dynamics and sustainability of ecosystems: from source to sea » in Rennes (Brittany France) (https://www.umr-decod.fr/en). The
research group offers an inspiring and creative working environment where innovative techniques such as remote sensing, genomics, spatial analysis, imaging, and modeling are utilized to study marine and
freshwater ecosystems across various biological levels, from genes to organisms, populations, and communities. The lab is well-equipped with state-of-the-art facilities for eDNA analysis, including a dedicated PCR-free laboratory for eDNA analysis, a digital PCR system (QIAcuity), and direct access to an Illumina sequencing platform, and a bioinformatic server.

The project benefits from an attractive collaborative environnement with strong partnerships involving the French Research Institute for Exploitation of the Sea (IFREMER, Verena Trenkel, Loïc Baulier),
the NGO « Des Requins et des Hommes » (Sharks and Humans, Armelle Jung), the French Office of Biodiversity, and the Sept-Îles Nationale Nature Reserve. The successful applicant will be part of a large international research team and will be required to maintain regular communication and collaborative efforts with fellow partners from Austria (Bettina Thalinger, PI), Iceland, Italy, Azores islands within the eWHALE consortium. The sharing of samples and expertise among the consortium members is at the core of the project, particularly for the intercalibration of methods across different species of interest.

Applications should include: CV with list of publications in peer-reviewed journals; a letter explaining research interests (max. 2 pages) and three academic references.
Please send your application and enquiries for further information to Erwan Quéméré, PhD (erwan.quemere@inrae.fr, subject: Postdoc application eWHALE).

Deadline 
Review of applications will begin on the 20th of August 2023 and will continue until the position is filled. Please note that further information might be requested from shortlisted applicants which will
be invited to attend an interview.
Expected starting date : 1st Octobre 2023.
Duration, appointment and salary : The position is available for 2 years (24 months). The fixed term contract provides a net salary between 2,310 euros and 2,480 euros per month depending on candidate’s experience.

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Puesto como especialista en eDNA para hacer crecer el sector

Oferta compartida por Cristina

eDNA Technical Support Specialist

Full Job Description


Smith-Root is a global leader in eDNA product development. We are looking for a motivated individual with a science background to join our eDNA Division and help support this growing sector. The main duties of this position will be to support our customers with educational content and scientific technical expertise. This is a highly proactive position that requires someone with strong communication skills and an enthusiasm for interacting with other scientists.

Position duties

1. Teach eDNA classes and equipment trainings.

2. Support the Smith-Root sales office with customer inquiries.

3. Create videos and other online training content.

4. Represent Smith-Root eDNA products at trade shows.

5. Visit customer regions and check in on customer needs.

6. Consult with engineering team on design modifications for eDNA equipment.

7. Help with research studies and equipment evaluations.

8. Assist with electrofishing classes (minor role)

Travel

This position will be required to travel up to 1 week per month.

Required qualifications

· B.S. degree in Biology, Environmental Science, or related field.

· Experience with eDNA sampling, extraction, qPCR, metabarcoding.

· Teaching experience related to scientific courses.

· Strong written and oral communication skills.

Preferred qualifications

· M.Sc. degree in Biology, Environmental Science, or related field.

· Significant field experience with Smith-Root eDNA equipment.

· Background including sales and customer service.

· Experience writing scientific papers.

· Willingness and enthusiasm to travel (up to 1 week).

Starting salary

$60,000/yr.

Telework options

This position will be primarily located on-site at the Smith-Root headquarters in Vancouver, WA. There is the potential for occasional work from home options.

We offer a generous benefit package, competitive wages, drug screening and background check required. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, national origin, sexual orientation, gender identity, disability, protected veteran status or other protected status. EEOE/M/F/Vet/Disabled. All information will be kept confidential according to EEO guidelines.

Please submit cover letter and CV/Resume.

Job Type: Full-time

Pay: $60,000.00 - $65,000.00 per year

Benefits:Dental insurance
Employee assistance program
Health insurance
Life insurance
Paid time off
Retirement plan
Vision insurance

Schedule:8 hour shift

Ability to commute/relocate:Vancouver, WA 98686: Reliably commute or planning to relocate before starting work (Required)

Experience:Customer service: 1 year (Preferred)

Work Location: In person

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Postdoc especializado en el estudio de series temporales de ADN ambiental marino

Oferta compartida por Nuria

Postdoc in ancient environmental DNA analysis at the Globe Institute. 

We are looking for a highly motivated and dynamic postdoctoral researcher to work on marine environmental DNA time series data, i.e. high-throughput sequencing metabarcoding and library preparation, sequence data processing,ecological analyses, for a 2-year position to commence around June 2023 or thereafter. 

The successful candidate will be part of the Copenhagen group of the ERC Synergy project, SEACHANGE (https://seachange-erc.eu/), in which a cross-disciplinary approach is adopted to assess the impact of major cultural transitions on marine ecosystem functioning and biodiversity. Apart from ancient environmental DNA analyses, the overall project includes classical zooarchaeology, stable isotope analyses, dating methods, marine historical ecology and ecosystem modelling.

A major focus of the role will be research into marine biodiversity changes across the European Mesolithic-Neolithic transition (from foraging to farming), specifically Southern Scandinavia (Work Package 1). 

The successful candidate will undertake DNA extraction, metabarcoding, next-generation sequencing, bioinformatic and ecological analysis of ancient environmental DNA from collected marine sediments and midden samples provided by project partners. Through collaboration with project partners the candidate will analyse a cross-disciplinary dataset of marine biodiversity changes, human impact and paleoclimate. 

Although material has already been collected, there are opportunities for further field collections from archaeological sites throughout Denmark. 

The main partners will be Prof Oliver Craig and Dr Harry Robson, University of York. Beyond the main objective, there are opportunities for the successful candidate to develop the project according to their interests and contribute to other work packages within the project. 

Additionally, there are opportunities to contribute to and lead novel methodological research to improve and develop laboratory and bioinformatic workflows for the analysis of ancient environmental DNA. 

Advisors will be Associate Professor Kristine Bohmann, Associate Professor Shyam Gopalakrishnan, and Assistant Professor Mikkel Winther Pedersen, all from Globe Institute. 

Find here further information and application:

Closing date: 03/04/2023.

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Oportunidad de PhD en ecología de cetáceos con trabajo de campo y de laboratorio

Oferta compartida por Cristina


Research Vacancies

PhD Studentship, Zoology

Job Posted: 03 Mar 2023
Closing Date for Applications: 24 Mar 2023
School: School of Biological, Earth & Environmental Sciences & the Environmental Research Institute
Contract Type: Fixed Term Whole-Time
Job Type: Research
Salary: see advert for stipend details


Fully funded three-year PhD project in Cetacean Ecology

Applications are invited for a three year PhD project funded under the BioDivERsa + project and based in the School of Biological, Earth & Environmental Sciences (BEES).

The eWHALE Project

The PhD research forms part of a wider project entitled “Combining environmental DNA sampling, whale watching & citizen science for stakeholder-driven marine biodiversity protection - NE Atlantic & Mediterranean”. The overall eWHALE project seeks to use environmental DNA (eDNA) from water samples to help in area-based conservation. This is a developing area that is moving away from presence/absence of a species to examining in more detail genetic diversity, but due to relatively small sample sizes has yet to determine population structure. To overcome this, in collaboration with industry, particularly whale watching companies, it is anticipated that over a number of spatial and temporal scales, we will be able to provide broader taxonomic resolution data for marine megafauna and associated prey. These efforts will generate an improved knowledge base for safeguarding marine megafauna and its genetic diversity.

The PhD Project

The PhD will focus on examining the feasibility of monitoring a number of large whale species and their prey from whale watching boats using eDNA. The student will interact with other team members in conducting this research which will involve fieldwork, including on board a whale watching vessel, laboratory work and data analysis.

Funding

The PhD position is funded through the 2021-2022 BioDivERsa + call for research proposals, with contributions from the national funders Irish National Parks & Wildlife Service and the EPA. It includes a tax-free stipend of €18,500 p.a. and tuition fees covered at the EU rate.

Start date

May 2023 or as soon as possible thereafter.

Eligibility criteria

Essential attributes:A 1.1 or 2.1 BSc honours degree (or equivalent) or in zoology, ecology, conservation, marine biology, genetics or a related subject.
A strong understanding of experimental design and data analysis, plus some experience of ecological and statistical modelling in R.
Experience in molecular laboratory work and analysis.
A good understanding of and strong interest in molecular approaches to monitoring wildlife and their prey.
Must be comfortable in fieldwork conditions including the use of small boats.
Willingness to work independently and as part of a team.
Full, clean driving licence.
Good communication skills in both written and oral format.

Desirable attributes:MSc in a related discipline
Experience of conducting marine mammal field work.
Experience of using Next Generation Sequencing bioinformatics pipelines to analyse large datasets.
Experience in boat work and photo-identification techniques.
Willingness to engage with the general public or stakeholders as part of outreach activities.
Familiarity/experience with large databases

Award - The student will be working under the supervision of Professor Emer Rogan and Dr Tom Reed. Periods of research work may also be required at various locations around the country. The Scholarship will start on May 2023. The scholarship will cover EU fees of €5,900 and a tax-free stipend of €18,500 per annum for a period of three years. UK applicants will be granted EU fee status due to the Common Travel Area with Ireland, but international students would likely be required to make up the fee deficit (currently approx. €10,000 p.a.). It is anticipated that the successful candidate will start the project as soon as possible after May 2023.

As part of a 3 year structured PhD at UCC, the student may also be required to undertake 15 credits of postgraduate modules aimed at equipping students with a range of transferable skills (e.g. project management, scientific writing, outreach & communication, and data analysis).

Please contact Professor Emer Rogan (E.Rogan@ucc.ie) if you have any questions about the position.



To Apply:

Please send your application to Professor Emer Rogan (E.Rogan@ucc.ie) with “eWHALE PhD application” in the subject line of the email.

Please attach a single PDF document that contains:A cover letter of 1 to 2 pages: Your letter should clearly set out your suitability and motivation for this PhD with reference to your past relevant experience and achievements.
A CV that includes your relevant experience, undergraduate results, any relevant publications (if applicable) and contact information for two academic referees.

Candidates will be shortlisted and interviewed via MS Teams within four weeks of the closing date, with the successful candidate informed shortly after interview.

The closing date for applications is 24th March 2023

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Súper oferta de un año para trabajar en conservación de delfines en Irlanda

Oferta compartida por Cristina


Research Vacancies

MSc by Research Position in Zoology

Job Posted: 03 Mar 2023
Closing Date for Applications: 24 Mar 2023
Department: Zoology
School: School of Biological, Earth & Environmental Sciences & the Environmental Research Institute
Contract Type: Fixed Term Whole-Time
Job Type: Research
Salary: see advert for stipend details



Fully funded one-year MSc project in Zoology

Applications are invited for a one-year MSc by Research project funded under the BioDivERsa + project and based in the School of Biological, Earth & Environmental Sciences (BEES).

The eWHALE Project

The MSc research forms part of a wider project entitled “Combining environmental DNA sampling, whale watching & citizen science for stakeholder-driven marine biodiversity protection - NE Atlantic & Mediterranean”. The overall eWHALE project seeks to use environmental DNA (eDNA) from water samples to help in area-based conservation. This is a developing area that is moving away from presence/absence of a species to examining in more detail genetic diversity, but due to relatively small sample sizes has yet to determine population structure. To overcome this, in collaboration with industry, particularly whale watching companies, it is anticipated that over a number of spatial and temporal scales, we will be able to provide broader taxonomic resolution data for marine megafauna and associated prey. These efforts will generate an improved knowledge base for safeguarding marine megafauna and its genetic diversity.

The MSc Project

The MSc will focus on examining the feasibility of monitoring bottlenose dolphins (Tursiops truncatus) in the outer Shannon estuary SAC using eDNA. The student will interact with other team members in conducting this research which will involve fieldwork, including on board a dolphin watching vessel, laboratory work and data analysis.

Funding

The MSc by Research position is funded for one year through the 2021-2022 BioDivERsa+ call for research proposals, with contributions from the national funders Irish National Parks & Wildlife Service and EPA. It includes a tax-free stipend of €18,500 p.a. and tuition fees covered at the EU rate.

Start date

May 2023 or as soon as possible thereafter.

Eligibility criteria

Essential attributes:A 1.1 or 2.1 BSc honours degree (or equivalent) in zoology, ecology, marine biology, conservation, genetics or a related subject.
Experience in molecular laboratory analysis.
Must be comfortable in fieldwork conditions including the use of small boats.
A good understanding of and strong interest in molecular approaches to monitoring marine populations and their prey.
A strong understanding of experimental design, data analysis and statistics, preferably using R packages.
Willingness to work independently and as part of a team.
Full, clean driving licence.

Desirable attributes:Experience of conducting field work, small boat handling and sea survival certificate.
Experience in photo-identification techniques.
Evidence of having completed a research project.
Willingness to engage with the general public or stakeholders as part of outreach activities.

Please contact Professor Emer Rogan (E.Rogan@ucc.ie) if you have any questions about the position.



To Apply:

Please send your application to Professor Emer Rogan (E.Rogan@ucc.ie) with “eWHALE MSc application” in the subject line of the email.

Please attach a single PDF document that contains:A cover letter of 1 to 2 pages: Your letter should clearly set out your suitability and motivation for this MSc with reference to your past relevant experience and achievements.
A CV that includes your relevant experience, undergraduate results, any relevant publications (if applicable) and contact information for two academic referees.

Candidates will be shortlisted and interviewed via MS Teams within four weeks of the closing date, with the successful candidate informed shortly after interview.

The closing date for applications is 24th March 2023.

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Postdoc en monitoreo de biodiversidad y perturbaciones ambientales basado en ADN ambiental y metabarcoding

Oferta compartida por Nuria

Bournemouth University's vision is worldwide recognition as a leading university for inspiring learning, advancing knowledge and enriching society through the fusion of education, research and practice. Our highly skilled and creative workforce is comprised of individuals drawn from a broad cross section of the globe, who reflect a variety of backgrounds, talents, perspectives and  experiences that help to build our global learning community.

We are seeking to appoint a Post-Doctoral Research Fellow (PDRF) in molecular ecology to conduct work on biodiversity monitoring using metabarcoding and genomic based techniques. The aim of the project is to use eDNA based metabarcoding methods to understand how environmental perturbations drive changes in species communities. We will be looking at changes in terrestrial and aquatic communities using water, soil and fecal samples.

The research fellow is expected to have well developed competencies in genomic data generation (genomic library preparation) and analysis of these data using appropriate methods to a standard appropriate for publication. Applications with expertise in some of the following methods are expected: extensive lab experience, genomic library preparation, metabarcoding, and bioinformatic data analysis. The ability to apply these methods to answering questions on species movement and biodiversity monitoring is essential.

The project is part of the wider larger research project 'Resolving the extinction crisis: sustainable and technological solutions for biodiversity and society', which sits within the Department of Life and Environmental Sciences. As part of this project, the molecular ecology fellow will work alongside three other research fellows covering topics on movements, and physiological and behavioural changes.

The appointment will be made based on research experience and track record.

This position is available on a fixed-term basis until 1 February 2026.

For further and informal discussions, please contact the Principal Investigator of the project, Professor Robert Britton, at the Department of Life and Environmental Sciences, email: rbritton@bournemouth.ac.uk or technical lead Dr Emilie Hardouin at ehardouin@bournemouth.ac.uk.

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Trabaja recogiendo muestras de biodiversidad en zonas costeras en Portugal

Oferta compartida por Cristina

Junior Researcher


Reference: BIOPOLIS 2023-07
Main research field: Biological Sciences


A contract for a PhD holder (Reference BIOPOLIS 2023-07 ANERIS), in the scope of the research project ANERIS (101094924) funded by international funds via the call HORIZON-INFRA-2022-TECH-01, is available at CIBIO/Associação BIOPOLIS, focused on the development the next generation of scientific instrumentation tools and methods for sensing marine-life.


Main research field: Biological Sciences.


Applicable Legislation
Decree-Law no. 57/2016 of August 29th, amended by Law 57/2017 and Regulatory Decree No. 11- A / 2017 which approved the doctorate hiring regime destined to stimulate scientific and technological employment for all knowledge areas (RJEC); Portuguese Labour Code, approved by Law 7/2009 of February 12, in its actual form.


Pursuant to article 13 of RJEC, the tender selection panel is formed by: Dr. Cátia Monteiro (Chair-CIBIO), having as effective members Dr. Fernando Lima (CIBIO) and Dr. Rui Seabra (CIBIO) and substitute member Dr. Nuno Queiroz (CIBIO).


The workplace shall be at Associação BIOPOLIS/CIBIO – Centro de Investigação em Biodiversidade e Recursos Genéticos, Rua Padre Armando Quintas nº7 | 4485-661 Vairão, PORTUGAL. Visits to other collaborating labs may take place.


Monthly remuneration to be paid is that set by subheading a) nr.1 article 15 of RJEC and article nr 2 of the Regulatory Decree nr. 11-A/2017, corresponding to level 33 of the Tabela Remuneratória Única, approved by Order no. 1553-C/2008 of December 31st, i.e. 2206,05 Euros.


Admission requirements: Application can be submitted by any national, foreign and stateless candidate(s) holding a doctorate degree in in areas compatible with the work plan. In case the doctorate degree was awarded by a foreign higher education institution, it must comply with the provisions of Decree-Law no. 341/2007 of October 12th, and all formalities established therein must be complied with at the signature of work contract.


We seek candidates with (i) experience in sampling biodiversity of rocky shore communities; (ii) interest in and experience with citizen science activities and/or science communication activities; (iii) experience in fieldwork on rocky shores under harsh conditions and skills regarding the logistics involving fieldwork at continental scales (independence, resilience, self-reliance); (iv) excellent communication skills in English (verbal and written); (v) experience on the use of physiological and molecular indicators of thermal stress in organisms from the rocky intertidal; (vi) experience in participating in international research projects; (vii) experience in publishing research papers as a lead author (viii) solid work ethics and good teamwork skills and finally; (ix) driver’s license valid in Europe at the time of the start of the project and availability to work outside regular working hours (weekends and holidays). Preferably, the candidate should be able to demonstrate these abilities through their Curriculum Vitae.


Working plan: Within the scope of the project, the following tasks will be developed: (i) collection of qualitative and quantitative biodiversity data in the rocky shore using photo-quadrats and environmental DNA; (ii) sample processing and analysis of genomic data collected during the project; (iii) planning and coordinating activities of citizen science (iv) preparation and participation in meetings and workshops in the framework of the project and (v) preparation of manuscripts.


The evaluation of the CV of the candidates, in particular the scientific merit and research experience will take into consideration the elements presented for the last five years of activity falling within the scope of the specific areas of the tender (see admission requirements) and will be performed according to the following criteria:


1. Integrated assessment of the curriculum trajectory of the candidate, based on an overview of their scientific merits, namely:
I. Overall scientific coherence of the CV – 20%;
II. Diversity and quality of scientific indicators, including relevant published peer-reviewed articles and abstracts in the specific areas of the announcement (see admission requirements) – 20%;
III. Participation in international research projects – 10%.


2. Relevant experience, proved in CV, in:
i) experience in sampling biodiversity of rocky shore communities – 20%
(ii) interest in and experience with citizen science activities and/or science communication activities – 10%
(iii) experience on the use of physiological and molecular indicators of thermal stress in rocky intertidal organisms – 15%
(iv) experience in participating in international research projects – 5%


Candidate final classification system shall be given based on a scale 0 to 100.


The panel shall deliberate by means of roll-call vote justified under adopted and disclosed selection criteria, with no abstentions allowed.


Minutes of panel meetings shall be executed and include a summary of all occurrences of said meeting, as well as of all votes casted by the members and respective reasoning, and shall be provided to candidates whenever required.


After selection criteria application, the panel shall prepare a sorted list of approved candidates and respective classification.


Panel’s final decision shall be validated by the leader of the institution, who is also in charge of deciding about the hiring.


Application formalization:
The applications are formalized at the electronic address https://www.cibio.pt with following documents in a digital form, in PDF format:
i) Curriculum vitae
ii) Qualifications Certificate
iii) Other relevant documentation


The application period is from 31/1/2023 to 13/02/2023


Expect starting date: 1 March 2023


The contract is expected to start on 01/05/2023


All candidates who formalize their applications in an improper way or fail to prove the requirements imposed by this tender are excluded from admission. In case of doubt, the panel is entitled to request any candidate to present further documentation supporting their statements.


False statements provided by the candidates shall be punished by law.


Both admitted and excluded candidate list and final classification list shall be notified by email.


Preliminary Hearing and Final Decision Deadline: After notification, all candidates have 10 working days to respond. Panel’s final decisions are pronounced within a period of 90 working days, from response period deadline.


This tender is exclusively destined to fill this specify position and can be terminated at any time until approval of final candidate list, expiring with the respective occupation of said position.
Non-discrimination and equal access policy: Associação BIOPOLIS actively promotes a non-discrimination and equal access policy, wherefore no candidate can be privileged, benefited, impaired or deprived of any rights whatsoever, or be exempt of any duties based on their ancestry, age, sex, sexual preference, marital status, family and economic conditions, instruction, origin or social conditions, genetic heritage, reduced work capacity, disability, chronic illness, nationality, ethnic origin or race, origin territory, language, religion, political or ideological convictions and union membership.


The panel has approved this announcement in meeting held on 19/01/2023.


According to Decree-Law no. 29/2001 of 3 February, disabled candidates shall be preferred in a situation of equal classification, and said preference supersedes any legal preferences. Candidates must declare, on their honour, their respective disability degree, type of disability and communication/expression means to be used during selection period on their application form, under the regulations above.

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Técnico de laboratorio para secuenciar muestras de ADN ambiental

Oferta compartida por Cristina

Lab technician (60–100%) with experience in molecular techniques (metabarcoding) in the field of ecology (position for 4–6 months)

You will be responsible and main executive for molecular tasks such as DNA extraction, application of PCR, amplicon sequencing, library preparation for next generation sequencing and beads cleanup within a well-defined project. The project encompasses library preparation and metabarcode sequencing of eDNA samples collected from rivers. You should also be willing to take over some general responsibilities of a shared molecular lab, such as biosafety, organization and data management.

To qualify for this position you have an education as a biology laboratory technician (Laborant/in Fachrichtung Biologie EFZ) or comparable qualifications. You have strong practical experience with metabarcoding techniques and are ideally familiar with working in a clean lab. Prior knowledge of the Illumina platform is an asset. You will be working in an international research environment, hence the ability to communicate and write in English and German is fundamental. You have a high degree of independence, and the ability to identify and solve problems autonomously. You have excellent skills in time management, are detail-oriented, and are a fast learner. You are organized, take care in recording data and documenting processes, and can optimize repetitive tasks while maintaining a high level of consistency.

Employment will be through University of Zurich, while the work place will be in the laboratories of Eawag in Dübendorf. You will be associated to a research project led by Dr. Luca Carraro and be part of the research group of Prof. Dr. Florian Altermatt. The position offers exciting activities in national and international research projects, which require enthusiasm, independence, flexibility and team play. University of Zurich and Eawag are both committed to promoting diversity and equal opportunities for underrepresented minorities, and to support the compatibility of family and work. Applications from women are especially welcome. For more information about UZH and Eawag and our work conditions please consult staff.uzh.ch and www.eawag.ch/en/aboutus/working/employment. The Department of Aquatic Ecology is situated in Duebendorf (near Zurich).

For full consideration, please submit your application by 23 December 2022 and include a letter describing your motivation, CV, copies of your qualifications, and names and contact information of two references. Interviews are foreseen mid-January. The ideal starting date is 1 March 2022. Exact duration and level of employment of the position can be discussed. For additional information contact Dr Luca Carraro.

We look forward to receiving your application. Please send your application through this webpage, any other way of applying will not be considered. Please click on the button below. This will take you directly to the application form.

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Postdoc coordinando y procesando muestras de DNA ambiental de lagos a escala global

Oferta compartida por Cristina

Postdoc position in assessing global eDNA hotspots
80%-100%, Zurich, fixed-term
print Drucken

The Environmental DNA Group of Prof. Kristy Deiner is seeking a Postdoc in assessing global eDNA hotspots.
Project background


The research will be conducted within the ERC project “LeDNA: Global measure of biodiversity by understanding biogeochemical cycling of environmental DNA in lakes”. The expected results will provide novel insights into the ability to use lakes across most ecoregions of the world to monitor biodiversity on large geographic scales. Lake watersheds cover about 25 % of the land mass of the earth. If lakes accumulate eDNA from their catchments, sampling them will provide the paradigm shift needed to vastly change the cost, speed and geographic scale with which species can be surveyed through time. The shift in where and what we monitor aims to generate knowledge on the state of biodiversity for global trend analysis, biodiversity discovery and impact decision-making to reverse the loss of life on Earth.
Job description


You are highly motivated for scientific research in molecular ecology with strong bioinformatics skills and evidence of successful coordination of large teams across cultures and geographies. You will be in charge of coordinating and processing a global sample of eDNA from lakes. As part of a larger team, you will contribute to the development of novel approaches for investigating whether lakes are accumulating eDNA from their watersheds on a global scale. You will learn methods for high-throughput eDNA metabarcoding using state-of-the-art analytical techniques and robotics.
Your profile
You must hold a PhD degree in a related field and possess a strong background in the molecular analysis as well as a documented record of previous research accomplishments.
Experience in one or more of the following techniques would be an advantage but is not required: eDNA metabarcoding, coordinating field surveys and transport modelling.
Good knowledge of spoken and written English as well as excellent communication and team skills are expected.

The ideal starting date is March 1, 2023, but with some flexibility for an earlier start.
We offer


ETH Zurich is a family-friendly employer with excellent working conditions. You can look forward to an exciting working environment, cultural diversity and attractive offers and benefits. chevron_right Working, teaching and research at ETH Zurich
We value diversity
In line with our values, ETH Zurich encourages an inclusive culture. We promote equality of opportunity, value diversity and nurture a working and learning environment in which the rights and dignity of all our staff and students are respected. Visit our Equal Opportunities and Diversity website to find out how we ensure a fair and open environment that allows everyone to grow and flourish.


Curious? So are we.


We look forward to receiving your online application with the following documents: 1-2 page cover letter describing your motivation for the position
a CV including contact information of 2-3 potential referees
a list of publications

Evaluation of applications will start December 1, but later applications will also be considered until the position is filled and until the online application window has been closed.

Please note that we exclusively accept applications submitted through our online application portal. Applications via email or postal services will not be considered.

For further information please visit our website. If you have any further questions about the position, please, contact Prof. Kristy Deiner by e-mail (kristy.deiner@usys.ethz.ch) (no applications).

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Doctorado que incluye recoger datos acusticos y muestras de eDNA en el Amazonas para desarrollar un marco de monitoreo de biodiversidad

Oferta compartida por Cristina

PhD position Biodiversity co-benefits of large scale restoration in the Brazilian Amazon

Supervisors: Dr Cristina Banks-Leite (mailto:c.banks@imperial.ac.uk); Prof Rob Ewers, Life Sciences; Dr. William Pearse, Life Sciences; Dr. Renato Crouzeilles, Mombak 

Department: Department of Life Sciences 

Climate change and biodiversity loss dominate concerns over anthropogenic modification of the natural world. For the last 40 years, each decade has been successively warmer than the last; the most recent with global surface temperatures 1.09°C higher than before the industrial era. In addition to a changing climate, life on Earth is under extreme pressure from habitat change, invasive species, over-exploitation and pollution (Millennium Ecosystem Assessment, 2005). As a result, it has been estimated that 1 million species will likely go extinct in the coming decades, coinciding with declines in overall biomass (IPBES report, 2019). 

We are now seeing a strong push for the development of large-scale solutions to reduce atmospheric carbon dioxide levels and air pollution to mitigate climate change, while also reversing trends in biodiversity decline. One solution being increasingly promoted is reforestation, as it is likely one of the most effective strategies to sequester CO2, and the most effective strategy to mitigate biodiversity loss in tropical forest areas. Reforestation is however an umbrella term for many types of interventions that range from planting non-native trees in non-forested areas to restoring native habitat. In this project, we are partnering with Mombak, a start-up based in Brazil aiming to become the world’s largest company on carbon removal with highest integrity, starting by reforestation the Brazilian Amazon. Mombak aims to have about 100,000 hectares of Amazonian forest under reforestation within the next five years and within this setting we will ask the following questions: 

1) How do soundscapes change through time and does landscape and regional features and planting scheme affect this trajectory? 

2) Are ecological trends revealed by acoustic monitoring similar to those obtained by environmental eDNA? 

3) What spatial and temporal environmental factors drive alpha, beta and gamma diversity? 

This project includes a field season in the Amazon to collect acoustic data and samples for eDNA analyses. Student will use machine learning to process acoustic data to calculate changes in acoustic composition and variation in acoustic diversity across the diel cycle. Student will also perform ecological analyses to compare acoustic data to eDNA, which will be sequenced by commercial partners. The outcome of this project will both aid Mombak to develop a cutting edge biodiversity monitoring framework for the carbon market and will drive forward the knowledge on biodiversity recovery in reforested areas.

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Estupenda oportunidad para estudiar la dispersión y la ecología fúngica mediante eDNA

Oferta compartida por Cristina

 

The Chaudhary lab provides individual-centered mentorship utilizing multi-mentor models that center mentee career goals in a collaborative, co-learning environment. Applicants who self-identify as individuals from groups historically excluded from ecology and/or persons excluded because of their ethnicity or race (PEERs) are particularly encouraged to apply. All lab members contribute to the cultivation of an equitable, inclusive, and antiracist lab group.

Chaudhary Lab graduate students and postdoctoral researchers are a part of the Ecology, Evolution, Environment & Society (EEES) Program, a highly interactive and vibrant interdisciplinary community of over 100 faculty, graduate students, and post-docs. Dartmouth College is a research-intensive Ivy League university located in Hanover, New Hampshire, 2.5 hours northwest of Boston and nestled between the picturesque Green and White Mountains.

PhD Students
We are looking for 1-2 PhD students to join the lab beginning Fall 2023! Students will develop an independent research trajectory broadly related to these research topics: the mechanisms of fungal community assembly at local and landscape scales and/or trait-based fungal dispersal and movement ecology using methods such as data synthesis, continent-scale field experiments, traditional microscopy, biophysics, and high-throughput sequencing of eDNA. All accepted PhD students are guaranteed 5 years of funding including summer salary and health insurance. No GRE or application fee is required.

To apply, please submit your CV and answers to 5 questions about your experience and interests before November 13 here: https://forms.gle/1uXxmr6PbARTzknT7 Selected applicants will be contacted for a Zoom interview ahead of the formal EEES application deadline on December 1 2022. Feel free to email me with any questions!

We recognize that the graduate application process can be opaque and difficult to navigate, presenting many barriers to prospective students. As part of efforts to increase the diversity and accessibility of graduate studies in ecology, evolutionary biology, environmental studies and earth systems, we encourage applicants to apply to the Dartmouth EEES Scholars Program, an in-person, fully funded 3-day workshop designed to demystify the graduate school application process. Applications are accepted in the spring for the fall workshop.

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ADN ambiental para estudiar biodiversidad de mamíferos en África: trabaja como técnico de investigación

Oferta compartida por Nuria

A research technician position is available at the Institute of Biology, University of Graz, Austria. The position is planned to start on October 1st, 2022 on a 20 hours/week basis and fixed-term for 1 year (with the possibility to extend for a second year). The successful candidate will contribute to the recently started FWF project: The dynamics of environmental DNA in subtropical waterholes: Uncovering the potential of aquatic eDNA to infer African terrestrial mammal biodiversity.

Responsibilities: 

• Perform molecular genetic analyses on environmental DNA (eDNA) and tissue samples, including:
• eDNA extractions from filtered water samples and sediment samples, and DNA extraction from tissue samples.
• Real-time PCR (especially TaqMan qPCR)
• Conventional end-point PCR
• Sanger sequencing
• Metabarcoding library preparation for HT-sequencing
• Training of bachelor and/or master students in laboratory processes

Qualifications required

• Methodological knowledge in relevant laboratory processes (DNA extractions, PCR, Sanger sequencing, qPCR. Experience with HT library preparation is an advantage).
• Ability to process samples with utmost cleanliness and care and under clean room conditions
• Ability to work independently as well as troubleshoot and optimize laboratory processes
• Experience in processing non-invasive samples, such as fecal or eDNA samples, especially from mammals, is an advantage.
• Completed bachelor studies in biology/microbiology/molecular biology/zoology or similar desirable
• Competence in written and spoken English is required, competence in German is advantageous for living in Graz but not required for the position.

Application documents:

• Cover letter with short personal introduction (less than a A4 page).
• Curriculum Vitae
• Proof of any university degrees
• Proof of any scientific publications, if available

Call open until August 20th, 2022
Please send any inquiries and/or applications to: tamara.schenekar@uni-graz.at

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Postdoc estudiando las poblaciones de delfines del Golfo de Vizcaya

Oferta compartida por Nuria

Post-doctoral project: Population genomics of common dolphins in the NE Atlantic

A 30-months post-doctoral position in population genomics is open at the University of Western Brittany as part of the DELMOGES program. The objective of the post-doctoral project is to evaluate the population structure of common dolphins in the Bay of Biscay and adjacent regions by using SNPs obtained through RAD sequencing, and using an eDNA approach. The hired post-doc will be spending the first 18 months at the LEMAR research unit located in Plouzané (RADseq approach), and the last 12 months at the MARBEC research unit in Montpellier (eDNA approach).

Scientific context:
Since the 1990s, significant dolphin mortality events have occurred during the winter in the Bay of Biscay, which result in stranding peaks on the French Atlantic coast. During these events, most stranded dolphins on this stretch of coast are common dolphins (Delphinus delphis), which present marks caused by fishing gear, indicating these dolphins were incidentally caught. Over time, this level of incidental catch could constitute a significant threat to the common dolphin population in the northeastern Atlantic. The DELMOGES program aims at providing knowledge (from ecological data to management strategies) that is necessary to remedy the issue of common dolphin bycatch. One of the first fundamental questions that must be addressed, is the existence of distinct populations in neritic versus oceanic zones. With that aim, the post-doctoral project will evaluate population structure using two approaches: 

1. by analyzing SNPs obtained through RADseq, using tissue samples collected from recently stranded neritic dolphins and biopsy samples collected in the oceanic zone of the Bay of Biscay, and 
2. by developing non-invasive sampling strategies to delimit and study observed populations (eDNA approach using filtered seawater collected during the biopsy campaign).

Post-doctoral project:
At the LEMAR, the hired post-doc will be in charge of DNA extractions, molecular sexing of biopsied dolphins, RAD library preparation, bioinformatic analysis of RADseq data using a calculation cluster,
analyses of SNPs to evaluate population structure, and writing a scientific publication synthetizing the results. During his/her year at MARBEC, the post-doc will analyze eDNA sequences targeting previously defined SNPs obtained in the first part of the project. For this work, the post-doc will also use a calculation cluster for bioinformatic analyses and will investigate the relevance of using an eDNA approach in this type of population genomic study. The post-doc will be in charge of writing a publication or a report on this second approach.

Candidate profile:
Appointment to a post-doctoral position requires that the applicant has a PhD, or an international degree equivalent to a PhD, within the subject of the position, at the time for employment decision. The candidate must have a strong background in population genomics and bioinformatics. Experience in genomic library preparation would be a plus but is not required. Knowledge in the management of protected marine species would also be appreciated.

Working place:
The postdoc will be located at the LEMAR (Laboratory of Environmental Marine Sciences) during the first 18 months. The LEMAR is situated within the IUEM (European Institute for Marine Studies) of the University of Western Brittany. The IUEM is located in Plouzané, about 8km away from the center of Brest. The LEMAR is an interdisciplinary laboratory that gathers a total of ca. 150 researchers and technicians and 50 PhD students. The LEMAR includes a molecular ecology lab, with all the necessary equipment to conduct basic labwork (DNA extraction, PCR amplification, etc..) and to construct DNA libraries. The last year of the project will be spent at the MARBEC laboratory. The postdoc will benefit from the experience in eDNA analysis of the team at MARBEC, and from the bioinformatic infrastructure from Ifremer. Both French and English are used as spoken languages in the two laboratories.

Salary: The salary is 1917 €/month net and 46 days-off/year.

Application:

1. The application must include: 
2. a cover letter presenting the research interests and relevant experience of the applicant (max. 2 pages), a curriculum vitae including the list of publications, 
3. copies of academic diplomas, and 
4. the names and e-mail addresses of two referees. 

Applications should be sent as a single pdf to amelia.viricel-pante@univ-brest.fr. The deadline for applications is June 15, 2022. Short-listed candidates will be interviewed on June 30, 2022, in a visio-conference mode.

Expected starting date: from September 1st, 2022

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Trabaja en ADN ambiental de criptógamas (líquenes, briófitas, algas y hongos) árticas y alpinas

Oferta compartida por Nuria

At The Arctic University Museum of Norway (UM) a position as Associate Professor is available within cryptogam (bryophytes, lichens, fungi) science. The position is affiliated to the newly established Norwegian Centre for Arctic Ecosystem Genomics (ArcEcoGen).

ArcEcoGen research focus the research on the combined effect of humans, climate, and biota on northern ecosystem dynamics in the past, present, and future using environmental DNA (eDNA) techniques. A key goal of ArcEcoGen is to build up a diverse, rigorous, and internationally leading research group in ecosystem genomics. The Museum's large scientific collections used for research and for generating DNA reference libraries includes ~40 000 specimens of fungi, 23 000 lichens, 24 000 bryophytes, and 3500 algae. Our collections also include sediment samples from arctic and alpine lakes as well as DNA extracts from sediments and organisms. We also have fully equipped laboratories and infrastructure for recovery and analyses of modern, ancient, and eDNA, as well as field equipment for sediment coring. We are currently recruiting PhDs, Post Docs, and associate professors as a part of a recent Aurora Centre funding award.

The position is expected to develop a research program within eDNA of cryptogams with a focus on northern ecosystems. Further, the position holder will be curator of our cryptogam collection and participate in outreach, administration, and some teaching. It is expected that the position holder will participate in research group collaboration and professional networks nationally and internationally and will obtain external funding from national and international funding agencies (e.g., RCN/EU).

You will conduct research and will be in charge of maintaining and developing the Museum's scientific collection of cryptogams.

For more details about the position and the application process visit: https://www.jobbnorge.no/en/available-jobs/job/221510/associate-professor-in-cryptogam-studies

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Postdoc monitorizando vertebrados terrestres con ADN ambiental...¡por el aire!

Oferta compartida por Nuria

We are looking for a highly motivated and dynamic postdoc for a 3-year position to work on airborne environmental DNA for terrestrial vertebrate monitoring. The position is to commence 1 May 2022 or as soon as possible thereafter.

Our research
The successful candidate will be part of the Environmental DNA Group at the Globe Institute, University of Copenhagen. The group is led by Associate Professor Kristine Bohmann and currently consists of one assistant professor, two postdocs and three PhD students. We focus on environmental DNA and the use of metabarcoding and high-throughput sequencing to assess biodiversity in both modern and ancient environmental samples. Our work includes e.g. the development of laboratory protocols, technical studies, analyses of environmental DNA time-series, and exploration of novel environmental DNA sample types. The latter includes our recent study demonstrating that airborne environmental DNA can be used to detect terrestrial vertebrates.

Your job
You will work on the newly funded Carlsberg Foundation Young Researcher Fellowship awarded to Associate Professor Kristine Bohmann to form a research team dedicated to establish the use of airborne environmental DNA for terrestrial vertebrate monitoring. In addition to state-of-the-art environmental DNA laboratory and computational workflows, the team will bridge disciplines through collaboration with a strong group of national and international collaborators to fine-tune the technique, expand it to natural environments, and apply it to biodiversity studies and standardised surveys.
You will take an active part in the overall team’s work and will work with both national and international collaborators and team members. You will work especially close with the team members based in Copenhagen.
The project involves further development of the technology for use in natural settings, exploration of challenges, opportunities and limitations, and the use of metabarcoding of airborne environmental DNA for vertebrate detection in applied contexts. This can include design and optimisation of air samplers, design of experiments in different natural ecosystems as well as in more controlled settings and comparison to existing monitoring methods. There will be flexibility to shape the postdoc fellowship within this framework.

Profile
We are looking for a highly motivated and enthusiastic scientist with the following competencies and experience:
Essential experience and skills

• A PhD in Biology or Molecular Biology
• You are highly experienced in working with ancient and/or modern environmental DNA
• You have experience with eDNA metabarcoding
• You have an active interest in the development of new methodologies for vertebrate monitoring
• Proficient communication skills and ability to work in teams
• An excellent publication track-record
• Excellent English skills - written and spoken
• Experience with independent international field work.

Desirable experience and skills:

• Experience in statistical analyses in the field of eDNA using R packages
• Programming skills
• You have knowledge and/or interest in ecology, biodiversity, vertebrate taxonomy or the like
• You are interested in science communication
• You are ideally resourceful and innovative, highly motivated, and enthusiastic with great interpersonal skills and the capability to work in close collaboration with others
• In addition, we put strong emphasis on interest in working in a cross-disciplinary project and for you to take ownership of your projects while having a collaborative mindset and ability to work as part of a team.

Place of employment
The place of employment is at the Globe Institute, Faculty of Health and Medical Sciences, University of Copenhagen. We offer creative and stimulating working conditions in a dynamic and international research environment. Our research facilities include state-of-the-art ancient and environmental DNA laboratories, the associated National High-throughput DNA Sequencing Centre and computational servers to successfully complete the postdoc tasks.

Terms of employment
The average weekly working hours are 37 hours per week. The position is a fixed-term position limited to a period of 3 years. The starting date is 1 May 2022 or as soon as possible hereafter.
Salary, pension and other conditions of employment are set in accordance with the Agreement between the Ministry of Finance and AC (Danish Confederation of Professional Associations) or other relevant organisation. Currently, the monthly salary starts at 35,000 DKK/approx. 4,700 EUR (October 2021 level). Depending on qualifications, a supplement may be negotiated. The employer will pay an additional 17.1 % to your pension fund.
Foreign and Danish applicants may be eligible for tax reductions, if they hold a PhD degree and have not lived in Denmark the last 10 years.
The position is covered by the Job Structure for Academic Staff at Universities 2020.

Questions
For further information please contact Kristine Bohmann, kbohmann@sund.ku.dk; www.sund.ku.dk
Information about the department can be found at www.globe.ku.dk
Foreign applicants may find this link useful: www.ism.ku.dk (International Staff Mobility).

Application procedure
Your online application must be submitted in English by clicking ‘Apply now’ at the end of this link. Furthermore, your application must include the following documents/attachments – all in PDF format:

1. Motivated letter of application (max. one page).
2. CV incl. education, work/research experience, language skills and other skills relevant for the position.
3. A certified/signed copy of a) PhD certificate and b) Master of Science certificate. If the PhD is not completed, a written statement from the supervisor will do.
4. List of publications.

Deadline for applications: Sunday 27 February 2022, 23.59pm CET

You may find more information here

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Beca en un proyecto que combina el estudio de ictioplancton con ADN ambiental

Oferta compartida por Nuria

The Centre for Marine Sciences (CCMAR) opens one (01) Research Fellowship for a person with a Master Degree (Bolsa de Investigação não conducente à obtenção de grau académico para mestre), for applicants of any nationality, including stateless candidates, and holders of political refugee statute, in the scientific field of Biological Sciences, within the research project: CIRCNA/BRB/0156/2019, named as A-Fish-DNA-Scan “Cutting-edge DNA-based approaches for improved monitoring and management of fisheries resources along Magellan-Elcano´s Atlantic route” funded by the Fundação para a Ciência e a Tecnologia, I.P./MCTES through national funding (PIDDAC).

This fellowship is intended for Master’s Degree holders that are enrolled in a non-academic degree course, integrated in the educational project of a higher education institution and developed in association or cooperation with one or more R&D units at the starting date of the fellowship.

The A-Fish-DNA-Scan project aims to develop and implement a DNA metabarcoding method for species profiling of ichthyoplankton, and to explore the utility of eDNA for monitoring marine fish communities. Specifically, the fellowship holder will be involved in the following tasks and objectives:

1. Provide support in ichthyoplankton and eDNA sampling and sample processing 
2. Field preparation and equipment maintenance for field surveys. 
3. Taxonomic identification and processing of ichthyoplankton samples.
4.  Contribute to the general lab maintenance.

Requirements for the application: Applicants must meet all the conditions stated below: 

1. Have a master’s degree in Biology, Marine Biology and/or Ecology, Fisheries, Marine Sciences or similar area.
2. Have a good knowledge of spoken and written English.
3. This fellowship may only be granted to those who do not exceed, with the conclusion of the present fellowship contract, an accumulated period of two years in this type of fellowship, consecutive or otherwise, to be confirmed through the candidate’s CV and should be explicit in the motivation letter.
4. The candidate must agree to enrol in a non-academic degree course offered by a higher education institution and developed in association or cooperation with one or more R&D units at the start of the fellowship. Enrolment at the time of application is not mandatory. 

 It is desirable that the applicants have experience in (as demonstrated in their Curriculum Vitae): 

• Zooplankton sampling techniques.
• Morphological identification of ichthyoplankton communities of coastal and estuarine areas.

Fellowship conditions: The fellowship will have an initial duration of 6 months, expected to start from December 2021 eventually renewed for periods of 3 months, or until the end of the project never exceeding a total maximum of 12 months. The fellowship must be carried out under an exclusivity regimen, according to the FCT Fellowship Regulation (RBI) and of the CCMAR fellowship regulations (see here) based on the Portuguese law 40/2004, of 18 of August (Scientific Research Fellowship holder statutes) amended by the Decree-Law 123/2019 of 28 of August. A maintenance allowance of 1104.64€ will be paid monthly, through bank transfer, and will be updated as stipulated by the Foundation for Science and Technology (see here https://bit.ly/2ZcxUGJ).

Application process and mandatory documents: Complete applications must be submitted online at https://www.ccmar.ualg.pt/list/job and must include:

• a motivation letter (in English);
• a detailed Curriculum Vitae (In English); 
• the declaration of honour, available from the application platform, declaring the intention to enrol in a non-academic degree course, integrated in the educational project of a higher education institution and developed in association or cooperation with one or more R&D unit, if the candidate is selected for the position; 
• a copy of the Master degree Certificate (if awarded by a Portuguese Higher Education Institution) or a copy of the certificate of recognition of the Master degree by a Portuguese Public Higher Education Institution or by DGES – Directorate General for Higher Education (if the degree was awarded by a foreign University;
• the complete declaration of honour, available from the application platform, if they are unable at the time of application, to provide a copy of the Master degree certificate (if awarded by a Portuguese Higher Education Institution) or a copy of the certificate of recognition of the Master degree (if the degree was awarded by a foreign University), as indicated above; 
• the email contact of up to 3 referees.

For more information visit https://www.ccmar.ualg.pt/job/ccmarbincgam132021 or https://www.ccmar.ualg.pt/sites/ccmar.ualg.pt/files/jobs/files/20211025-anuncio_bincgam_13_2021_en.pdf

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Combina bosques de kelp, ADN ambiental y redes tróficas en este postdoc

Oferta compartida por Nuria

We invite applications for a 2-year and half (30 months) postdoctoral position at INRAE "Ecology and Ecosystem Health" lab located at Rennes (France), to work on the TROPHIC STRUCTURE AND FUNCTIONING OF KELP-FOREST FOOD WEBS

CONTEXT. Kelp forests are extensive underwater habitats that range along 25% of the world’s coastlines, providing valuable resources, habitat, and services for coastal communities. These ecosystems are facing major threats due to marine pollution, overfishing, overgrazing (by urchins) and climate change that affect their trophic structure and functioning. To understand the mechanisms (such as functional compensation) that favor the resilience and stability of kelp forests, we need to improve our knowledge on their food web structure under variable environmental conditions.

This project co-funded by the French Office of Biodiversity (OFB) and the Brittany region aims to study (1) the trophic interactions among organisms associated with kelp forest (seals, birds, fish, invertebrates and algae) in two marine protected areas and (2) the relationship between kelp forest
functional structure (diet of bioindicator species) and productivity (fish size and abundance) along a gradient of turbidity and human pressures (sediment discharge).

The successful candidate will be involved in sampling activities (in coordination with scientific partners and stakeholders) and will lead eDNA analyses developing a multi-marker DNA metabarcoding approach. She/He will be also responsible for the compilation of reference database of DNA barcodes, bioinformatics analysis and manuscript write-up.

REQUIREMENTS. Candidates should have a PhD degree in ecology or equivalent and have spent at least 18 months outside of France between May 1st, 2017 and the starting of the project (a prerequisite from the Brittany region). She/He must have a background in eDNA analysis. Experience in designing and applying metabarcoding analysis as well as additional skills in community ecology in particular on marine ecosystems will be appreciated. Autonomy and interpersonal skills (ability to work in groups) are mandatory. The candidate will be selected based on previous scientific track record and qualifications of relevance to the described projects

The position is an excellent opportunity for candidates who plan to defend their PhD before January 2022. All nationalities and genders are encouraged to apply. The position may start between January and May 2022. The fixed term contract provides a net salary of 2,200 euros per month.


LOCATION & HOST LAB. The successful applicant will work directly with Erwan Quéméré in a stimulating research group based in the Research unit ESE Ecology and Ecosystem Health (Rennes, France) (https://www6.rennes.inrae.fr/ese_eng/). The group offers a creative working environment. It uses a broad range of innovative techniques (remote-sensing, genomic, spatial, imagery, modelling, etc.) to study marine and freshwater ecosystems at various levels of biological organisation (from genes to organisms, populations and communities). The lab and local collaborators benefit from all equipment to develop the metabarcoding approach: a room dedicated to “environmental DNA” analysis (PCR-free laboratory), an Illumina sequencing platform and a bioinformatic server. The project benefits from an attractive collaborative environment with the National Museum of Natural History (MNHN) (Paris, Concarneau, Dinard), IFREMER (Brest) and the Biological Station of Roscoff (CNRS, Sorbonne University). The successful candidate will move regularly between sampling sites in Brittany, meet partners and participate in conferences.

APPLICATION DEADLINE. 30.11.2021.
Incoming applications will continue to be considered until the position is filled.Applications should include: CV with list of publications in peer-reviewed journals; a letter explaining research interests and three academic references. Applications should be sent to Erwan Quéméré, erwan.quemere@inrae.fr, Eric Petit, eric.petit@inrae.fr and Jean-Charles Leclerc, leclercjc@gmail.com 

Informal inquiries may be made to Erwan Quéméré, erwan.quemere@inrae.fr

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Tres puestos como técnico de laboratorio en una start-up enfocada en ADN ambiental

Oferta compartida por Nuria

Applications are invited for Laboratory Technicians/Senior Laboratory Technicians to work in either the R&D Team or the Development Team within an expanding science-based company. Primarily a laboratory-based role focusing on either the delivery of R&D projects or the development of our existing products, you will also assist with analysis of samples for our commercial clients using DNA metabarcoding and other techniques. The successful candidate(s) will report to either the Head of R&D or the Lead Scientist (Product Delivery), dependent on role, and will also work closely with other members of the science team.

Applicants should have significant experience of molecular laboratory work and enjoy working in a dynamic, collaborative, team environment. Experience of working with environmental DNA or metabarcoding would be an advantage but is not essential.
For the Research role we particularly welcome applications from candidates with experience in any of the following areas; Recombinase polymerase amplification (RPA), Loop-mediated isothermal amplification (LAMP), Nanopore sequencing, and CRISPR.
For the Development role we particularly welcome applications from candidates with experience in laboratory method & Assay development, troubleshooting, optimisation and robotics.

NatureMetrics is a high-growth business bringing DNA-based tools to environmental managers to measure and monitor biodiversity. We have grown steadily for five years and are now expanding following a recent investment raise. We are a team of bright, enthusiastic individuals who are excited to be breaking new ground and disrupting the world of biodiversity monitoring. We take great pride in our work and our team and are seeking new team members who will do the same.

The full specification can be found below. To apply, please email careers@naturemetrics.co.uk including a CV and covering letter and stating that you are applying for the R&D laboratory technician job. There is no fixed deadline for applications, and the positions will be held open until we find the right candidate.
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Roles & Responsibilities

General
Depending on experience/seniority, the role will include managerial responsibilities, training, and the full analysis and dissemination of results. For both roles, the successful candidate(s) may be required to carry out routine analysis of clients’ samples following established protocols where required.

Research technician
This technical role is part of the newly created R&D Team, which is tasked with developing, evaluating, and implementing novel technologies and methodologies to expand our current core biomonitoring services.
The key responsibilities for the successful applicant(s) are:

• Design and plan experiments with support of the Head of R&D and other members of the research team
• Assist with delivery of both externally and internally funded R&D projects
• Contribute to the development of new sampling technologies and sampling-kit design
• Utilise new and emerging technologies/methods for the analysis of DNA and RNA
• Contribute to the analysis and interpretation of experimental data (research technician)
• Be responsible for the generation, analysis and interpretation of experimental data, identify issues, troubleshoot and implement necessary changes (Senior Research technician)
• Provide the Development and Product Delivery teams with resources to implement new methods and technology

The successful applicant(s) would report to the Head of R&D working very closely with the existing laboratory Product Delivery team and would support in projects and experiments identified by the Products and Business Development teams.

Development technician
This technical role is core to the new Lab Development Team, which is responsible for optimising and expanding our current core services. These current services are based primarily on the high throughput sequencing of amplicons using Illumina technology, but additional services (see our website) exist that would benefit from systematic ground-up evaluation and optimisation.
The key responsibilities for the successful applicant would be to:

• Optimise the throughput/quality of our current laboratory methods without compromising our quality of science
• It is essential that the applicant has a good practical understanding of DNA extraction, PCR, library preparation, and sequencing technology, but also a willingness to bring in new methodologies and implement/evaluate them with the aim of developing new in-house protocols.
• Investigate, through large scale experiments and statistics, the limitations of our current services.
• e.g. Assist in the thorough testing of our existing products to inform the Product team of their limitations and potentially update our existing offerings.
• Validate new assays to target new organisms using our existing kits and technology
• e.g. NatureMetrics strives to offer highly validated assays, which we evaluate using published validation scales (e.g. Thalinger et al. 2021 – https://doi.org/10.1002/edn3.189). One of the roles for the successful applicant would be to perform the laboratory aspects that underpin the higher levels of validation for new assays.

The successful applicant(s) would assist in the research new methods/techniques to improve our current services, delivery of the experiments, analysis of the data generated, and the full documentation and dissemination of the results/changes to the wider team.

The successful applicant(s) would report to the Lead Scientist (Product Delivery), work very closely with the existing laboratory Product Delivery team, our in-house assay developer, and would support in projects and experiments identified by the Product team.

Documentation

1. Keep detailed laboratory notes following our standard procedures
2. Follow internal protocol for sample tracking & documentation
3. Assist in expanding the current suite of templates used by the lab
4. Generate standard protocols for internal use as an R&D output
5. Prepare training documents/manuals/videos.
6. Write detailed experimental plans

Communication

• Be prepared to report the outcomes of these experiments to a growing team of technical staff, particularly where they result in changes to the standard operating procedure.
• Collaborate closely with other members of the laboratory team and maintain ongoing communication to ensure efficient planning and prioritisation of tasks.
• Keep the Lab manager informed on laboratory matters, including stock levels.

Safety
Use COSHH and risk assessments, compliance with company procedures and HSE legal requirements

Personal Specification
Education & qualities

• No specific level of education is required, but you must have at least two years experience working in a molecular laboratory in either an academic or industry setting.

Specialist knowledge, skills & experience

• High level of attention to detail is vital
• Must be able to use pipettes with confidence and precision
• Core laboratory skills: DNA extraction, PCR, qPCR, high throughput sequencing technology, and a thorough understanding of the methodologies
• Able to write standard operating procedures
• Able to pick up and apply new methods with minimal guidance (Senior Technician)
• Able to generate and complete experimental plans (Senior Technician)
• Able to effectively track and maintain the expected timelines of multiple on–going projects

Interpersonal & communication skills

• Organised & meticulous
• Able to work independently and as part of a team
• Willing to follow established protocols
• Able to train other technicians
• Additional requirements
• All applicants are legally required to demonstrate the right to work/permission to work in the UK.
• Terms and Conditions

Location
NatureMetrics Ltd, CABI Site, Bakeham Lane, Egham, Surrey, TW20 9TY. The company will be relocating it’s premises to Guildford in the second half of 2021.
Working pattern and hours
The postholder is expected to work 40 hours a week Monday to Friday with core hours between 10am and 4pm. 
Length of appointment: Full time, permanent

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